Please follow these steps to process a payroll entry by reference:
Click Payroll.
Click Payroll Entry by Reference.
Select Transaction type of either: Payment or Deduction.
Enter Reference number in Reference.
Enter Worker number in Worker field.
Enter input amount (negative and positives values can be entered dependent on transaction).
Enter Effective date.
Leave Retain unticked, if it is a one off payment.
Click Retain if it is a payment that will need to be taken for the foreseeable future.
Review and if satisfied, press Exit.
When you run your next main calculation you should find the transaction has been processed against the worker (only at time of effective date).